Applying bioinformatics to analyze auxinrelated genes in robusta coffee genome (Coffea canephora L.)

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Đã Xuất bản: Jun 30, 2024
DOI: https://doi.org/10.5281/zenodo.12720540
Từ khóa:
Auxin, Bộ gen, C. canephora, Domain, sinh tin học

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T. 18 S. 03 (2024): (Vol.18 No.3/2024) Tạp chí Khoa học Tây Nguyên (TNJoS)

Applying bioinformatics to analyze auxinrelated genes in robusta coffee genome (Coffea canephora L.)

Tác giả

Nguyễn Đình Sỹ

Tóm tắt



Coffea canephora, which belongs to the Rubiaceae family, is one of the most popular cultivated coffea worldwide. In this study, we identified and analyzed candidate genes that involved in auxinrelated gens in the C. canephora genome. The results showed that genome of C. canephora consists of 152 protein-coding genes related to auxin which are divided into 7 main groups depending on domain and motif: Auxin-induced protein; Auxin-binding protein; Auxin transporter-like protein; Auxin carrier component; Auxin response factor; Auxin-responsive protein; Auxin signaling protein. Using SMART software to analyze protein structure, the result indicated that there are some characteristic domains involved in auxin response such as EamA; AUX_IAA; Auxin inducible; Aldo_ket_red; Cupin; Aa_ trans; B3, Auxin_resp; Mem_trans; B561; GH3; and LRR domain. The study on candidate proteincoding genes relating to auxin is important for elucidating protein functions involved in various cellular processes, growth, development and climate change adaptation of C. canephora.




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Khoa học Tự nhiên & Công nghệ
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Tác phẩm này được cấp phép theo Giấy phép quốc tế Creative Commons Attribution-NonCommercial-NoDeri Phái sinh 4.0 .

Tiểu sử Tác giả

Nguyễn Đình Sỹ

Khoa Khoa học Tự nhiên và Công nghệ, Trường Đại học Tây Nguyên;
Tác giả liên hệ: Nguyễn Đình Sỹ; Tel: 0961367958; Email: ndsy@ttn.edu.vn.

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